Jalview 2.3.0.0

The Barton Group ❘ Open Source

Jalview is a versatile multiple sequence alignment editor and visualization tool developed by The Barton Group. It can be used to analyze and compare DNA, RNA, and protein sequences from a variety of organisms and sources.

Using Jalview's intuitive interface, one can easily load, visualize, and edit multiple sequence alignments. Its powerful analysis tools include options for identifying conserved regions, calculating phylogenetic trees, and identifying mutations and sequence variations.

The software's features extend beyond simple alignment and analysis. Jalview also enables users to generate publication-quality figures and export data in a variety of file formats, such as FASTA, Clustal, and Nexus.

Jalview's capabilities make it a popular choice for researchers in diverse fields such as biology, bioinformatics, and genetics. It is a free and open-source software that runs on a range of operating systems, including Windows, Mac OS X, and Linux.

Overview

Jalview is a Open Source software in the category Development developed by The Barton Group.

The latest version of Jalview is 2.3.0.0, released on 02/18/2008. It was initially added to our database on 10/29/2007.

Jalview runs on the following operating systems: Windows.

Jalview has not been rated by our users yet.

Pros

Supports a wide range of sequence formats like FASTA, GenBank, and Clustal
Ability to visualize and analyze multiple sequence alignments simultaneously
Offers various tools for comparative genomics and phylogenetic analysis
User-friendly interface with customizable features and themes
Regular updates and community support

Cons

May be overwhelming for novice users due to the wide range of features
Occasional bugs and stability issues reported by some users
Requires a learning curve to fully utilize all advanced functions

FAQ

What is Jalview?

Jalview is a sequence alignment and analysis tool developed by The Barton Group.

What can Jalview be used for?

Jalview can be used for multiple sequence alignment, editing alignment files, phylogenetic tree analysis, secondary structure prediction, and visualization of macromolecular structures.

Can Jalview handle large datasets?

Yes, Jalview can handle large datasets efficiently by utilizing various optimized algorithms and data structures.

What formats does Jalview support for input and output?

Jalview supports a wide range of sequence and alignment file formats such as FASTA, CLUSTAL, Stockholm, MSF, Newick, Nexus, and many more.

Is Jalview available for multiple operating systems?

Yes, Jalview is available for Windows, macOS, and Linux operating systems.

Does Jalview have a user-friendly interface?

Yes, Jalview provides an intuitive and interactive user interface that simplifies the analysis of multiple sequence alignments.

Can I customize the display settings in Jalview?

Yes, Jalview offers flexible customization options for visualizing sequence alignments, including color schemes, labels, annotation tracks, and structure overlays.

Does Jalview support online collaboration?

Yes, Jalview offers collaboration features that allow users to share alignments and analysis results with others in real-time.

Can I script or automate tasks in Jalview?

Yes, Jalview provides a powerful built-in scripting language (JavaScript) and supports automation through a command-line interface.

Is Jalview open-source?

Yes, Jalview is an open-source software released under the GNU General Public License (GPL) version 3.

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